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the GMOD database schema
PLpgSQL 47 23
Source code for JBrowse 2, a modern React-based genome browser
TypeScript 284 83
JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, see https://github.com/GMOD/jbrowse-components.
JavaScript 473 199
Genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin.
Groovy 139 87
JBrowse 2 plugin for editing annotations on an Apollo server
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Parse BAM and BAM index files in javascript for node and the browser
Parser for bigwig and bigbed files
Read CRAM v3 and v2 in node or in the browser
Nodejs filehandle for reading bgzip+.gzi compressed files
VCF (variant call format) parser
read and write UCSC track and assembly hub files in node or the browser
Read .2bit files with pure JS. Works in node or webpack.
Read Tabix-indexed files, either with .tbi or .csi indexes, in node or the browser
Read JBrowse v1 nested containment list feature stores from modern JS
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