triplot() does not work in my case..

[Nehagupta90]

Hello everyone

I am using triplot library for feature selection but it give me error.. I simply train a model using mlr3 and create an explainer and then the following :

library(triplot)
model_triplot(explainer)

The error message is:

Error in hclust(as.dist(1 - abs(cor(data, method = cor_method))), method = clust_method) :
NA/NaN/Inf in foreign function call (arg 10)
In addition: Warning message:
In cor(data, method = cor_method) : the standard deviation is zero

[hbaniecki]

@Nehagupta90 there is an explain_mlr3() function in the DALEXtra package. Please try it out and (if it fails) provide a minimal reproducible example to debug this issue.

[Nehagupta90]

Thank you for your email. I have already used explain_mlr3. data = readARFF("china.arff") index= sample(1:nrow(data), 0.7*nrow(data)) train= data[index,] test= data[-index,] task = TaskRegr$new("data", backend = train, target = "Effort") learner= lrn("regr.randomForest") model= learner$train(task ) explainer = explain_mlr3(model, data = test[,-19], y = test$Effort, label="RF") library(triplot) model_triplot(explainer)

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On Sat, Aug 21, 2021 at 1:58 PM Hubert Baniecki ***@***.***> wrote: @Nehagupta90 <https://github.com/Nehagupta90> there is an explain_mlr3() function in the DALEXtra <https://github.com/ModelOriented/DALEXtra> package. Please try it out and (if it fails) provide a minimal reproducible example to debug this issue. — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#23 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AN2ZZ2MR267MXSA2BZSXABTT56IGTANCNFSM5CRY37EA> . Triage notifications on the go with GitHub Mobile for iOS <https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675> or Android <https://play.google.com/store/apps/details?id=com.github.android&utm_campaign=notification-email> .

[Nehagupta90]

Hi, I am still waiting for the problem to be resolved.. Why I am getting the above error? Warm regards

…

On Sat, Aug 21, 2021 at 3:17 PM Neha gupta ***@***.***> wrote: Thank you for your email. I have already used explain_mlr3. data = readARFF("china.arff") index= sample(1:nrow(data), 0.7*nrow(data)) train= data[index,] test= data[-index,] task = TaskRegr$new("data", backend = train, target = "Effort") learner= lrn("regr.randomForest") model= learner$train(task ) explainer = explain_mlr3(model, data = test[,-19], y = test$Effort, label="RF") library(triplot) model_triplot(explainer) On Sat, Aug 21, 2021 at 1:58 PM Hubert Baniecki ***@***.***> wrote: > @Nehagupta90 <https://github.com/Nehagupta90> there is an explain_mlr3() > function in the DALEXtra <https://github.com/ModelOriented/DALEXtra> > package. Please try it out and (if it fails) provide a minimal reproducible > example to debug this issue. > > — > You are receiving this because you were mentioned. > Reply to this email directly, view it on GitHub > <#23 (comment)>, > or unsubscribe > <https://github.com/notifications/unsubscribe-auth/AN2ZZ2MR267MXSA2BZSXABTT56IGTANCNFSM5CRY37EA> > . > Triage notifications on the go with GitHub Mobile for iOS > <https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675> > or Android > <https://play.google.com/store/apps/details?id=com.github.android&utm_campaign=notification-email> > . >

[p-schaefer]

@Nehagupta90 Did you ever resolve this problem? I'm having the same issue.

Edit: I think this has to do with NA's in the data. Being able to pass arguments to cor(use =x) here might help.

[Nehagupta90]

Yes but with some models it works and with some it gives problems.. I am not sure why we are not getting response from experts here.

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On Wed, Dec 1, 2021 at 4:44 PM p-schaefer ***@***.***> wrote: @Nehagupta90 <https://github.com/Nehagupta90> Did you ever resolve this problem? I'm having the same issue. — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#23 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AN2ZZ2OPHYKNCQU4UFKLDVLUOY7GNANCNFSM5CRY37EA> . Triage notifications on the go with GitHub Mobile for iOS <https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675> or Android <https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub>.